Warlord, I don't think points from after SCI were subtracted. For example, I got a Grafxicist point a few days ago (which I have very few of), and it's still there. Also, if puke had corrected to pre-SCI point levels, we all probably would have lost some Playa points when the correction happened, but we didn't.
I am pretty sure the only bugs now are:
1) the duplicated categories issue.
2) the "Total" is short by X (as defined in my post above, #17240 :: 2011.09.22 6:58am). X is now easily calculated as the number of "bizarro" Mixist points you have, or (negative Chipist points you have / 2). X(Warlord) = 1563. :)
It is worth noting that older botbrs have buggy totals to begin with, e.g. Warlord's total is not actually off by 1563, due to (presumed) prior point skew. Mine is off by X+3 *shrug*. But Blot's total demonstrates my conjecture nicely.
Edit: I may have misunderstood you, Warlord - maybe you are saying that the points correctly awarded at the closing of SCI were subtracted (not just the points from the bogus tally). I don't really know, because my stellar SCI entry didn't get any bonus points ;), but I'd suggest that it's more likely that correct SCI points were just never awarded in the first place. I guess puke would have to check the point logs to be certain.