I know what software I could get to make music but Botb specific, is there a recommended or default music making program just for Botb?

huh would be cool to have an allrounder tool for every format, but since there are so many different formats on here, you should just refer to the format-specific lyceum page to get more information about good tools

This might be too little too late (it's been almost a month since this thread was posted), but If you're looking for a modern s3xmodit tracker, you'd be hard pressed not to go with Open ModPlug Tracker. A lot of work has gone into it over the past couple years and it's surprisingly good. So unless you're more of a traditionalist looking for a more classic mod editing experience, OpenMPT is a good bet. Otherwise there's MilkyTracker amongst others for a more traditional but still cross-platform experience.